<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Hi Dave,</div><div><br></div><div>This line says which directories from the host should be staged on to the compute node's destination directory. This is what I found from torque documentation. I included the link to the page below. Hopefully, this helps.</div><div><br></div><div><br></div>$usecp
    
    
      Format:
      &lt;HOST&gt;:&lt;SRCDIR&gt; &lt;DSTDIR&gt;
    
    
      Description:
      Specifies which directories should be staged (see <a href="http://www.clusterresources.com/torquedocs21/6.2filesystems.shtml#torquedm">TORQUE Data Management</a>)
    
    
      Example:
      <tt>$usecp *.fte.com:/data /usr/local/data</tt><div><font class="Apple-style-span" face="monospace"><br></font></div><div><font class="Apple-style-span" face="monospace"><a href="http://www.clusterresources.com/torquedocs21/a.cmomconfig.shtml">http://www.clusterresources.com/torquedocs21/a.cmomconfig.shtml</a><br></font></div><div><div><div><br></div><div>Best,</div><div>Sreedhar.</div><div><br></div><div>On Sep 14, 2011, at 1:18 PM, Zarnoch, Dave wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">


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<div lang="EN-US" link="blue" vlink="purple" style="tab-interval:.5in;word-wrap: break-word;
-webkit-nbsp-mode: space;-webkit-line-break: after-white-space">

<div class="Section1"><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt">Sreedhar.</span></font><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy"><o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><o:p>&nbsp;</o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Thanks for your suggestion!<o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><o:p>&nbsp;</o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Just a question….<o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">The second line:<o:p></o:p></span></font></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="3" face="Times New Roman"><span style="font-size:12.0pt;font-family:&quot;Times New Roman&quot;">$usecp
crunch.its.nyu.edu:/home /home<o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><o:p>&nbsp;</o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Is this because the script that I’m
running is located in /home or is the location “/home” used for something else?<o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><o:p>&nbsp;</o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Thanks!<o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><o:p>&nbsp;</o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Dave<o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><o:p>&nbsp;</o:p></span></font></p>

<div><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy;mso-no-proof:yes">Dave Zarnoch<o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy;mso-no-proof:yes">UNIX Systems
Administration<o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy;mso-no-proof:yes">(215)200-0911<o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy;mso-no-proof:yes"><a href="mailto:Dave.Zarnoch@sykes.com">Dave.Zarnoch@sykes.com</a></span></font><font size="3" color="navy" face="Times New Roman"><span style="font-size:12.0pt;
font-family:&quot;Times New Roman&quot;;color:navy;mso-no-proof:yes"><o:p></o:p></span></font></p>

</div><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><o:p>&nbsp;</o:p></span></font></p>

<div>

<div class="MsoNormal" align="center" style="margin-bottom:0in;margin-bottom:.0001pt;
text-align:center"><font size="3" face="Times New Roman"><span style="font-size:
12.0pt;font-family:&quot;Times New Roman&quot;">

<hr size="2" width="100%" align="center" tabindex="-1">

</span></font></div><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><b><font size="2" face="Tahoma"><span style="font-size:10.0pt;font-family:Tahoma;font-weight:
bold">From:</span></font></b><font size="2" face="Tahoma"><span style="font-size:
10.0pt;font-family:Tahoma"> <a href="mailto:torqueusers-bounces@supercluster.org">torqueusers-bounces@supercluster.org</a>
[mailto:torqueusers-bounces@supercluster.org] <b><span style="font-weight:bold">On
Behalf Of </span></b>Sreedhar Manchu<br>
<b><span style="font-weight:bold">Sent:</span></b> Wednesday, September 14,
2011 1:11 PM<br>
<b><span style="font-weight:bold">To:</span></b> Torque Users Mailing List<br>
<b><span style="font-weight:bold">Subject:</span></b> Re: [torqueusers] Batch
not running : Things to check</span></font><font size="3" face="Times New Roman"><span style="font-size:12.0pt;font-family:&quot;Times New Roman&quot;"><o:p></o:p></span></font></p>

</div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></font></p><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt">Hi
Dave,<o:p></o:p></span></font></p>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt">This
is what I have in my config file.<o:p></o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></font></p>

</div>

<div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt">$pbsserver
crunch.local<o:p></o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt">$usecp
crunch.its.nyu.edu:/home /home<o:p></o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt">$spool_as_final_name
true<o:p></o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt">I
think you need to mention the second line.<o:p></o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt">Best,<o:p></o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt">Sreedhar.<o:p></o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></font></p>

</div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></font></p>

</div>

<div>

<div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt">On
Sep 14, 2011, at 12:48 PM, <st1:personname w:st="on">Zarnoch, Dave</st1:personname>
wrote:<o:p></o:p></span></font></p>

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<div link="blue" vlink="purple"><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">James,<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">I tried entering:<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">qsub -V –I &nbsp;-l nodes=1 -q dn<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">and it just hangs there<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">Do I have a problem with “mom”?<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Here’s some files in mom_priv:<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy">usphl1ora002@/var/spool/torque/mom_priv&gt;ls -l jobs<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
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color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy">usphl1ora002@/var/spool/torque/mom_priv&gt;more config<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy">$pbsserver<span style="mso-spacerun:yes">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span><a href="http://usphl1ora002.amer.sykes.com/">usphl1ora002.amer.sykes.com</a><span style="mso-spacerun:yes">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span># note: hostname running pbs_server<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy">$logevent<span style="mso-spacerun:yes">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span>255<span style="mso-spacerun:yes">&nbsp;&nbsp;&nbsp;&nbsp; </span># bitmap of which events to log<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy">usphl1ora002@/var/spool/torque/mom_priv&gt;more mom.lock<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy">25994<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy">usphl1ora002@/var/spool/torque/mom_priv&gt;ps -ef | grep 25994 |
grep -v grep<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy">root<span style="mso-spacerun:yes">&nbsp;&nbsp;&nbsp;&nbsp; </span>25994<span style="mso-spacerun:yes">&nbsp;&nbsp;&nbsp;&nbsp; </span>1<span style="mso-spacerun:yes">&nbsp; </span>0
Sep12 ?<span style="mso-spacerun:yes">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span>00:01:03
/usr/local/sbin/pbs_mom -p<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Not really familiar with “mom”<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><b style="mso-bidi-font-weight:normal"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy;font-weight:bold;mso-bidi-font-weight:normal">I also don’t have a
lot of documentation on Torque…<u1:p></u1:p></span></font></b><o:p></o:p></p><p class="MsoNormal"><b style="mso-bidi-font-weight:normal"><font size="2" color="navy" face="Arial"><span style="font-size:10.0pt;font-family:Arial;
color:navy;font-weight:bold;mso-bidi-font-weight:normal">Do you know of any
good web pages?<u1:p></u1:p></span></font></b><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Thanks!<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Dave<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p>

<div><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy;mso-no-proof:yes">Dave Zarnoch<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy;mso-no-proof:yes">UNIX Systems
Administration<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy;mso-no-proof:yes">(215)200-0911<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy;mso-no-proof:yes"><a href="mailto:Dave.Zarnoch@sykes.com">Dave.Zarnoch@sykes.com</a></span></font><o:p></o:p></p>

</div>

<u1:p></u1:p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p>

<div>

<div class="MsoNormal" align="center" style="margin-bottom:0in;margin-bottom:.0001pt;
text-align:center"><font size="3" face="Times New Roman"><span style="font-size:
12.0pt;font-family:&quot;Times New Roman&quot;">

<hr size="2" width="100%" align="center" tabindex="-1">

</span></font></div><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><b><font size="2" face="Tahoma"><span style="font-size:10.0pt;font-family:Tahoma;font-weight:
bold">From:</span></font></b><font size="2" face="Tahoma"><span style="font-size:
10.0pt;font-family:Tahoma"> <a href="mailto:torqueusers-bounces@supercluster.org">torqueusers-bounces@supercluster.org</a>
[mailto:torqueusers-bounces@supercluster.org] <b><span style="font-weight:bold">On
Behalf Of </span></b>Coyle, James J [ITACD]<br>
<b><span style="font-weight:bold">Sent:</span></b> Wednesday, September 14,
2011 12:00 PM<br>
<b><span style="font-weight:bold">To:</span></b> Torque Users Mailing List<br>
<b><span style="font-weight:bold">Subject:</span></b> Re: [torqueusers] Batch
not running : Things to check</span></font><o:p></o:p></p>

</div>

<u1:p></u1:p><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><u1:p>&nbsp;</u1:p><o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D">Dave,<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D">&nbsp; Welcome to Torque. I switched
from NQS some time ago, and Torque/PBS has been a good replacement for me.<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D">Things to check:<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D">&nbsp; What does the error output say? (
Probably in file </span></font><font size="2" face="Arial"><span style="font-size:
10.0pt;font-family:Arial">dn_test.txt.e[0-9]* )</span></font><o:p></o:p></p>

<u1:p></u1:p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D">&nbsp; Permissions on &nbsp;</span></font><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">/home/zarnocda/torque/scripts_test/dn_test.sh
, is it executable?&nbsp; <u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">You may need:</span></font><font color="#1f497d"><span style="color:#1F497D">&nbsp;&nbsp; &nbsp;chmod u+x </span></font><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">/home/zarnocda/torque/scripts_test/dn_test.sh<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">&nbsp;&nbsp;I’d also check if
/home/zarnocda/torque/scripts_test/dn_test.sh <u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">even exists on the compute node.<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">e.g.&nbsp; ls
/home/zarnocda/torque/scripts_test/dn_test.sh&nbsp; executable<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D">&nbsp; I usually use the interactive
opion ( qsub –I ) to debug these kinds of problems.<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D">You could issue:<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">qsub -V –I &nbsp;-l nodes=1 -q dn</span></font><o:p></o:p></p>

<u1:p></u1:p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D">which will start an interactive jobs and
log you into the mother superior node for that job<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D">where you can then try issuing the
commands within your job that is not working.<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="5" color="#1f497d" face="Consolas"><span style="font-size:16.0pt;font-family:
Consolas;color:#1F497D">James Coyle, PhD<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="5" color="#1f497d" face="Consolas"><span style="font-size:16.0pt;font-family:
Consolas;color:#1F497D">High Performance Computing
Group&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="5" color="#1f497d" face="Consolas"><span style="font-size:16.0pt;font-family:
Consolas;color:#1F497D">&nbsp;Iowa State
Univ.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="5" color="#1f497d" face="Consolas"><span style="font-size:16.0pt;font-family:
Consolas;color:#1F497D">web: <a href="http://www.public.iastate.edu/~jjc">http://jjc.public.iastate.edu/</a><u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;color:#1F497D"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p>

<div style="border:none;border-left:solid blue 1.5pt;padding:0in 0in 0in 4.0pt">

<div>

<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in"><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><b><font size="2" face="Tahoma"><span style="font-size:10.0pt;font-family:Tahoma;font-weight:
bold">From:</span></font></b><font size="2" face="Tahoma"><span style="font-size:
10.0pt;font-family:Tahoma"> <a href="mailto:torqueusers-bounces@supercluster.org">torqueusers-bounces@supercluster.org</a>
[mailto:torqueusers-bounces@supercluster.org] <b><span style="font-weight:bold">On
Behalf Of <st1:personname u6:st="on"></st1:personname></span></b><st1:personname w:st="on">Zarnoch,
 Dave</st1:personname><br>
<b><span style="font-weight:bold">Sent:</span></b> Wednesday, September 14,
2011 8:42 AM<br>
<b><span style="font-weight:bold">To:</span></b> <a href="mailto:torqueusers@supercluster.org">torqueusers@supercluster.org</a><br>
<b><span style="font-weight:bold">Subject:</span></b> [torqueusers] Batch not
running<br>
<b><span style="font-weight:bold">Importance:</span></b> High<u1:p></u1:p></span></font><o:p></o:p></p>

</div>

</div><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><u1:p>&nbsp;</u1:p><o:p></o:p></span></font></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">Hello folks,<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">New to Torque, used to run NQS….<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">Concerning Torque…<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">I have a small script:<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">$ more
dn_test.sh<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">#!/bin/sh<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">#<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">PATH=/bin:/usr/bin:/usr/local/bin:/etc:/usr/sbin:/usr/ucb:$HOME/bin:/usr/bin/X11<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">:/sbin:.<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">export PATH<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">DATE=`date
+%H%M`<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">echo
"Hello"<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">touch
/tmp/dn_test_${DATE}<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">sleep 90<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">When I submit
the script:<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">qsub -V -l
nodes=1 -q dn dn_test.sh<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">It runs fine.<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">But I need
to run batch…<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">I created a
text file “dn_test.txt”<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">That
contains:<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">/home/zarnocda/torque/scripts_test/dn_test.sh<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">When I run:<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">qsub -V -l
nodes=1 –q dn dn_test.txt<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">It appears to process the file:<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" face="Arial"><span style="font-size:10.0pt;
font-family:Arial">qstat –s<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><b><font size="2" color="red" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:red;font-weight:bold">Job
id&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
Name&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
User&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Time Use
S Queue<u1:p></u1:p></span></font></b><o:p></o:p></p><p class="MsoNormal"><b><font size="2" color="red" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:red;font-weight:bold">-------------------------
---------------- --------------- -------- - -----<u1:p></u1:p></span></font></b><o:p></o:p></p><p class="MsoNormal"><b><font size="2" color="red" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:red;font-weight:bold">7592.usphl1ora002.amer&nbsp;&nbsp;&nbsp;
dn_test.txt&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
zarnocda&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
0 R dn&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <u1:p></u1:p></span></font></b><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">But it doesn’t excute the script within:<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="2" face="Arial"><span style="font-size:10.0pt;font-family:Arial">/home/zarnocda/torque/scripts_test/dn_test.sh<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Any help!<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Thanks!<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p>&nbsp;</u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Dave<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Dave Zarnoch<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">UNIX Systems Administration<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">(215)200-0911<u1:p></u1:p></span></font><o:p></o:p></p><p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><a href="mailto:Dave.Zarnoch@sykes.com">Dave.Zarnoch@sykes.com</a></span></font><o:p></o:p></p>

<u1:p></u1:p><p class="MsoNormal"><font size="2" face="Calibri"><span style="font-size:11.0pt"><u1:p>&nbsp;</u1:p><o:p></o:p></span></font></p>

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torqueusers mailing list<br>
<a href="mailto:torqueusers@supercluster.org">torqueusers@supercluster.org</a><br>
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</u1:smarttagtype></div><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><font size="3" face="Times New Roman"><span style="font-size:12.0pt;font-family:&quot;Times New Roman&quot;"><o:p>&nbsp;</o:p></span></font></p>

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_______________________________________________<br>torqueusers mailing list<br><a href="mailto:torqueusers@supercluster.org">torqueusers@supercluster.org</a><br>http://www.supercluster.org/mailman/listinfo/torqueusers<br></o:smarttagtype></blockquote></div><br></div></body></html>