I've tried that, unfortunately I never get a $PBS_NODEFILE that spans more than one node.<br clear="all"><br>-- max(∫(εὐδαιμονία)dt)<br><br>Dr Gordon Wells<br>Bioinformatics and Computational Biology Unit<br>Department of Biochemistry<br>
University of Pretoria<br>
<br><br><div class="gmail_quote">On 7 October 2010 10:02, Vaibhav Pol <span dir="ltr"><<a href="mailto:vaibhavp@cdac.in">vaibhavp@cdac.in</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Hi ,<br>
you must set server as well as queue attribute.<br>
<br>
set server resources_available.nodect = (number of nodes * cpus per node)<br>
set <queue name> resources_available.nodect = (number of nodes * cpus per node)<br>
<br>
<br>
Thanks and regards,<br>
Vaibhav Pol<br>
National PARAM Supercomputing Facility<br>
Centre for Development of Advanced Computing<br>
Ganeshkhind Road<br>
Pune University Campus<br>
PUNE-Maharastra<br>
Phone +91-20-25704176 ext: 176<br>
Cell Phone : +919850466409<div><div></div><div class="h5"><br>
<br>
<br>
On Thu, 7 Oct 2010, Gordon Wells wrote:<br>
<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div></div><div class="h5">
Hi<br>
<br>
I've now tried torque 2.5.2 as well, same problems.<br>
Setting resources_available.nodect has no effect except allowing me to use<br>
"-l nodes=x" with x > 14<br>
<br>
regards<br>
<br>
-- max(∫(εὐδαιμονία)dt)<br>
<br>
Dr Gordon Wells<br>
Bioinformatics and Computational Biology Unit<br>
Department of Biochemistry<br>
University of Pretoria<br>
<br>
<br>
On 6 October 2010 20:04, Glen Beane <<a href="mailto:glen.beane@gmail.com" target="_blank">glen.beane@gmail.com</a>> wrote:<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
On Wed, Oct 6, 2010 at 1:12 PM, Gordon Wells <<a href="mailto:gordon.wells@gmail.com" target="_blank">gordon.wells@gmail.com</a>><br>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Can I confirm that this will definitely fix the problem? Unfortunately<br>
</blockquote>
this<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
cluster also needs to be glite compatible, 2.3.6 seems to be the latest<br>
</blockquote>
that<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
will work<br>
</blockquote>
<br>
<br>
i'm not certain... do you happen to have set server<br>
resources_available.nodect set? I have seen bugs with PBS_NODEFILE<br>
contents when this server attribute is set. This may be a<br>
manifestation of this bug, and I'm not sure if it has been corrected.<br>
<br>
try unsetting this and submitting a job with -l nodes=X:ppn=Y<br>
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</blockquote>
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