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actually, after several compiling problems, I forgot to install
mpich-mx on all nodes.<br>
<span id="result_box" class="short_text"><span
style="background-color: rgb(255, 255, 255);"
title="grazie molte per il tuo suggerimento">Thanks very much for your
suggestion.</span></span><br>
<br>
Greenseid, Joseph M (IS) ha scritto:
<blockquote
cite="mid:D089B7B0C0FBCD498494B5A0AA74827D02117AD9@XMBIL112.northgrum.com"
type="cite">
<title>[torqueusers] problem PBS torque when submit job with MPICH</title>
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<div dir="ltr"><font color="#000000" face="Arial" size="2">Does
/opt/mpich-mx/bin/mpirun exist on the compute nodes? It exists on your
head node, so when you run it directly from the command line, it works
fine. However, Torque will run the contents of the job script from the
first node in the node set it gives you. If that isn't installed on
the back end nodes, that'd be your problem.</font></div>
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<div dir="ltr"><font face="Arial" size="2">--Joe</font></div>
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<font face="Tahoma" size="2"><b>From:</b>
<a class="moz-txt-link-abbreviated" href="mailto:torqueusers-bounces@supercluster.org">torqueusers-bounces@supercluster.org</a> on behalf of Luca Nannipieri<br>
<b>Sent:</b> Mon 11/30/2009 6:20 AM<br>
<b>To:</b> torqueusers<br>
<b>Subject:</b> [torqueusers] problem PBS torque when submit job with
MPICH<br>
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<p><font size="2">we have a Rocks 5.0 installation with PBS/torque
roll, myrinet-mx roll<br>
and intel roll.<br>
If compile my program with /opt/mpich-mx/bin/mpif90 and run with<br>
/opt/mpich-mx/bin/mpirun without PBS, the job works fine without errors.<br>
If we submitted the same job with PBS torque, received the follow error:<br>
<br>
/opt/torque/mom_priv/jobs/1094.hpc2.pi.ingv.it.SC: line 12:<br>
/opt/mpich-mx/bin/mpirun: No such file or directory<br>
<br>
<br>
you can see the job script below:<br>
<br>
#---------------------------------------------<br>
#!/bin/sh<br>
#PBS -l nodes=5:ppn=4<br>
#PBS -l walltime=240:00:00<br>
#PBS -A ongaro<br>
#PBS -N prova_intel-mx<br>
#PBS -m abe<br>
#PBS -M <a class="moz-txt-link-abbreviated" href="mailto:nannipieri@pi.ingv.it">nannipieri@pi.ingv.it</a><br>
export PBS_RSHCOMMAND=/usr/bin/ssh<br>
export RSHCOMMAND=/usr/bin/ssh<br>
cd $PBS_O_WORKDIR<br>
/opt/mpich-mx/bin/mpirun -np 20 -machinefile $PBS_NODEFILE<br>
/home/nannipieri/pdac_intel-mx.x<br>
#---------------------------------------------<br>
<br>
we do not understand where is the problem.<br>
<br>
--<br>
Ing. Luca Nannipieri<br>
Istituto Nazionale di Geofisica e Vulcanologia<br>
Sezione di Pisa<br>
Via della Faggiola, 32 - 56126 Pisa - Italy<br>
Tel. +39 050 8311926<br>
fax: +39 050 8311942<br>
<a moz-do-not-send="true"
href="http://www.pi.ingv.it/Pagine_personali/nannipieri.html">http://www.pi.ingv.it/Pagine_personali/nannipieri.html</a><br>
<br>
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torqueusers mailing list<br>
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</blockquote>
<br>
<br>
<pre class="moz-signature" cols="72">--
Ing. Luca Nannipieri
Istituto Nazionale di Geofisica e Vulcanologia
Sezione di Pisa
Via della Faggiola, 32 - 56126 Pisa - Italy
Tel. +39 050 8311926
fax: +39 050 8311942
<a class="moz-txt-link-freetext" href="http://www.pi.ingv.it/Pagine_personali/nannipieri.html">http://www.pi.ingv.it/Pagine_personali/nannipieri.html</a></pre>
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