[Moabusers] Missing Environment Variables when using msub

[Martins, Flavio]

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I am running Moab V5.1.0p3 and torque 2.1.8 on a Penguin Computing scyld
(V4.1) cluster.

When I use qsub to submit jobs, I get a list of environment variables
that get passed to the job as described in the qsub documentation
(http://www.clusterresources.com/wiki/doku.php?id=torque:commands:qsub).
When I use msub to submit a job, my environment is missing some of the
variables that I get with qsub, in particular all the variables that get
the PBS_O_ prefix including PBS_O_HOST, PBS_O_QUEUE, and PBS_O_WORKDIR.
This causes all my scripts to crash since the first thing they do is
"cd" to PBS_O_WORKDIR.

Is this normal behavior for msub?

Flavio Martins
Senior Engineer - Aerodynamics / CFD
Florida Turbine Technologies Inc.
1701 Military Trail, Suite 110
Jupiter, FL 33458-7101
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Phone: (561) 427-6261
Fax: (561) 427-6191


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