[Moabusers] data staging
Brock Palen
brockp at umich.edu
Mon Oct 16 15:37:56 MDT 2006
We are having some problems with setting up data staging on moab with
torque-2.1.2
In trying to run /opt/moab/tools/system.query.dstage.pl The
following function is missing:
Undefined subroutine &main::readSpool called at ./
system.query.dstage.pl line 48
The Moab::Tools PM does not include that sub and i can not find it
declared any other place.
I try to submit the job like so:
brockp at nyx ~]$ qsub -I -l nodes=1 -q svti -W stagein=/home/brockp/
file.dat at ragnar.engin.umich.edu:/home/brockp/file.dat
and moab is configured with
RMCFG[nyx] TYPE=PBS HOST=nyx.engin.umich.edu DATARM=storage
RMCFG[nyx] SBINDIR=/usr/local/torque/sbin
DATASTAGEMODEL EXTERNAL
RMCFG[storage] TYPE=NATIVE RESOURCETYPE=STORAGE HOST=nyx.engin.umich.edu
RMCFG[storage] SYSTEMQUERYURL=exec:///opt/moab/tools/
system.query.dstage.pl
RMCFG[stoarge] CLUSTERQUERYURL=exec:///opt/moab/tools/
cluster.query.dstage.pl
RMCFG[storage] SBINDIR=/usr/local/torque/sbin
I get the following:
qsub: PBS: MOAB_INFO: interactive job can never run - data stage for
RM 'storage' not possible - it has no nodelist (check CLUSTERQUERYURL)
I think this might be resolved by the location of the sub's
writeSpool and readSpool
Some notes: The host providing the data (ragnar.engin) has ssh keys
set such that the cluster nodes can scp files from that machine to
them selfs without a password. BUT if i dont configure moab at all
and just tell torque to data stage i get the message in the torque
email of:
PBS Job Id: 39374.nyx.engin.umich.edu
Job Name: STDIN
File stage in failed, see below.
Job will be retried later, please investigate and correct problem.
Unable to copy file brockp at ragnar.engin.umich.edu:/home/brockp/
file.dat to /home/brockp/file.dat
>>> error from copy
>>>
Host key verification failed.
>>> end error output
This is odd because i can go as my user and ssh to ragnar from the
nodes and scp from the nodes files off ragnar.
Brock Palen
Center for Advanced Computing
brockp at umich.edu
(734)936-1985
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