<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<HTML><HEAD><TITLE>RE: [Mauiusers] completed jobs still shown in queue</TITLE>
<META http-equiv=Content-Type content="text/html; charset=us-ascii">
<META content="MSHTML 6.00.2900.2802" name=GENERATOR></HEAD>
<BODY>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=632212321-01032006>Neither, it was just a short shell script. I posed it
earlier. Here it is again, in case you missed it. </SPAN></FONT></DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=632212321-01032006></SPAN></FONT> </DIV>
<DIV dir=ltr align=left><FONT size=2><SPAN
class=632212321-01032006>#!/bin/bash<BR>echo "Hello from $(uname -n)"<BR>sleep
20<BR>printenv | egrep "PBS_NODENUM|PBS_VNODENUM|PBS_TASKNUM|PBS_O_HOST" |
sort<BR>echo " "<BR>exit 0</SPAN></FONT></DIV>
<P><FONT face=Arial size=2>Prentice </FONT></P><BR>
<DIV class=OutlookMessageHeader lang=en-us dir=ltr align=left>
<HR tabIndex=-1>
<FONT face=Tahoma size=2><B>From:</B> Stewart.Samuels@sanofi-aventis.com
[mailto:Stewart.Samuels@sanofi-aventis.com] <BR><B>Sent:</B> Wednesday, March
01, 2006 2:57 PM<BR><B>To:</B> Bisbal, Prentice;
mauiusers@supercluster.org<BR><B>Subject:</B> RE: [Mauiusers] completed jobs
still shown in queue<BR></FONT><BR></DIV>
<DIV></DIV>
<DIV><SPAN class=904285619-01032006><FONT face=Verdana color=#0000ff size=2>Just
curious, are you using pvm or mpi with these jobs?</FONT></SPAN></DIV>
<DIV><SPAN class=904285619-01032006><FONT face=Verdana color=#0000ff
size=2></FONT></SPAN> </DIV>
<DIV><SPAN
class=904285619-01032006>
<FONT face=Verdana color=#0000ff size=2>Stewart</FONT></SPAN></DIV>
<BLOCKQUOTE dir=ltr style="MARGIN-RIGHT: 0px">
<DIV class=OutlookMessageHeader dir=ltr align=left><FONT face=Tahoma
size=2>-----Original Message-----<BR><B>From:</B> Bisbal, Prentice
[mailto:PBisbal@LexPharma.com]<BR><B>Sent:</B> Wednesday, March 01, 2006 1:30
PM<BR><B>To:</B> Samuels, Stewart PH/US;
mauiusers@supercluster.org<BR><B>Subject:</B> RE: [Mauiusers] completed jobs
still shown in queue<BR><BR></FONT></DIV><!-- Converted from text/plain format -->
<P><FONT size=2>qdel didn't work for me - something about the job being in an
invalid state for that operation.<BR><BR>All the jobs involved were on a
system that was very loaded (8 cpus, all at 99% usage). I suspect the heavy
loading of the system caused delays in communication which in turn caused some
sort fo message time out.<BR><BR>Prentice<BR><BR><BR><BR>-----Original
Message-----<BR>From: Stewart.Samuels@sanofi-aventis.com [<A
href="mailto:Stewart.Samuels@sanofi-aventis.com">mailto:Stewart.Samuels@sanofi-aventis.com</A>]<BR>Sent:
Wed 3/1/2006 12:45 PM<BR>To: Bisbal, Prentice;
mauiusers@supercluster.org<BR>Subject: RE: [Mauiusers] completed jobs still
shown in queue<BR><BR>We se the same behavior periodically. We are
running torque-1.2.0p1 and maui-3.2.6p11. Not only is this an anoyance,
but it also prevents maui from scheduling jobs on those nodes. Most of
the time you can qdel
them.<BR><BR>
Stewart<BR><BR>-----Original Message-----<BR>From:
mauiusers-bounces@supercluster.org [<A
href="mailto:mauiusers-bounces@supercluster.org">mailto:mauiusers-bounces@supercluster.org</A>]On
Behalf Of Bisbal, Prentice<BR>Sent: Wednesday, March 01, 2006 10:03 AM<BR>To:
mauiusers@supercluster.org<BR>Subject: [Mauiusers] completed jobs still shown
in queue<BR><BR><BR><BR>I have 4 simple jobs stuck in my queue. The jobs ran
to completion, but they are still shown as being in the queue:<BR><BR><BR>$
showq<BR>ACTIVE
JOBS--------------------<BR>JOBNAME
USERNAME STATE PROC
REMAINING
STARTTIME<BR><BR>3183
pxxxxxx Running 1
00:46:01 Wed Mar 1
09:44:58<BR>3184
pxxxxxx Running 1
00:46:04 Wed Mar 1
09:45:01<BR>3185
pxxxxxx Running 1
00:46:04 Wed Mar 1
09:45:01<BR>3186
pxxxxxx Running 1
00:46:04 Wed Mar 1 09:45:01<BR><BR> 4
Active Jobs 4 of 22 Processors
Active
(18.18%)<BR>
1 of 7 Nodes Active
(14.29%)<BR><BR>A tracejob shows that these jobs completed and exited w/o any
errors:<BR><BR>$ tracejob 3186<BR><BR>Job:
3186.hw-emperor.lexpharma.com<BR><BR>03/01/2006 09:43:38
S enqueuing into batch, state 1 hop 1<BR>03/01/2006
09:43:38 S Job Queued at request
of<BR>
pxxxxxx@hw-underdog.xxxxxxxxx.com owner
=<BR>
pxxxxxx@hw-underdog.xxxxxxxxx.com, job name
=<BR>
PBS_TEST.87, queue = batch<BR>03/01/2006 09:45:02 S
Job Modified at request
of<BR>
maui@hw-emperor.lexpharma.com<BR>03/01/2006 09:45:02 S
Job Run at request of maui@hw-emperor.xxxxxxxxxx.com<BR>03/01/2006
09:45:33 S Exit_status=0
resources_used.cpupercent=0<BR>
resources_used.cput=00:00:00
resources_used.mem=5408kb<BR>
resources_used.vmem=9280kb<BR>
resources_used.walltime=00:00:30<BR><BR>Any idea why these jobs are still
shown in the queue? What is the best way to get rid of
them?<BR><BR>Prentice<BR><BR><BR><BR></FONT></P></BLOCKQUOTE></BODY></HTML>